{
  "_id": "6a103616acfb0bcc41c99f14",
  "Package": "hhh4contacts",
  "Version": "0.13.4",
  "Date": "2024-10-07",
  "License": "GPL-2",
  "Authors@R": "c(person(\"Sebastian\", \"Meyer\",\nemail = \"seb.meyer@fau.de\",\nrole = c(\"aut\",\"cre\"),\ncomment = c(ORCID = \"0000-0002-1791-9449\")),\nperson(\"Leonhard\", \"Held\",\nemail = \"Leonhard.Held@uzh.ch\",\nrole = c(\"ctb\",\"ths\"),\ncomment = c(ORCID = \"0000-0002-8686-5325\")))",
  "Title": "Age-Structured Spatio-Temporal Models for Infectious Disease\nCounts",
  "Description": "Meyer and Held (2017) <doi:10.1093/biostatistics/kxw051>\npresent an age-structured spatio-temporal model for infectious\ndisease counts. The approach is illustrated in a case study on\nnorovirus gastroenteritis in Berlin, 2011-2015, by age group,\ncity district and week, using additional contact data from the\nPOLYMOD survey. This package contains the data and code to\nreproduce the results from the paper, see\n'demo(\"hhh4contacts\")'.",
  "URL": "https://codeberg.org/EE-hub/hhh4contacts",
  "BugReports": "https://codeberg.org/EE-hub/hhh4contacts/issues",
  "LazyData": "yes",
  "RoxygenNote": "7.3.2",
  "Repository": "https://bastistician.r-universe.dev",
  "Date/Publication": "2024-10-07 11:47:45 UTC",
  "RemoteUrl": "https://codeberg.org/ee-hub/hhh4contacts",
  "RemoteRef": "HEAD",
  "RemoteSha": "3eb3f608e0d7d44e4f8bbcb8c03010f0517a6558",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-12 06:54:31 UTC",
    "User": "root"
  },
  "Author": "Sebastian Meyer [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-1791-9449>),\nLeonhard Held [ctb, ths] (ORCID:\n<https://orcid.org/0000-0002-8686-5325>)",
  "Maintainer": "Sebastian Meyer <seb.meyer@fau.de>",
  "MD5sum": "3956f0342c4abc7feb91562444393822",
  "_user": "bastistician",
  "_type": "src",
  "_file": "hhh4contacts_0.13.4.tar.gz",
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  "_filesize": 385579,
  "_sha256": "23044fc7d7506598486258e08d7f32b3a2b016b5a0672ad76f112791ff17de94",
  "_created": "2026-05-12T06:54:31.000Z",
  "_published": "2026-05-22T10:55:18.788Z",
  "_distro": "noble",
  "_jobs": [
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  "_buildurl": "https://github.com/r-universe/bastistician/actions/runs/25718478183",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://codeberg.org/ee-hub/hhh4contacts",
  "_commit": {
    "id": "3eb3f608e0d7d44e4f8bbcb8c03010f0517a6558",
    "author": "Sebastian Meyer <seb.meyer@fau.de>",
    "committer": "Sebastian Meyer <seb.meyer@fau.de>",
    "message": "update reference output (version numbers)\n",
    "time": 1728301665
  },
  "_maintainer": {
    "name": "Sebastian Meyer",
    "email": "seb.meyer@fau.de",
    "login": "bastistician",
    "mastodon": "@bastistician@fosstodon.org",
    "uuid": 4366501,
    "orcid": "0000-0002-1791-9449"
  },
  "_registered": true,
  "_dependencies": [
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      "package": "R",
      "version": ">= 3.2.0",
      "role": "Depends"
    },
    {
      "package": "grDevices",
      "role": "Depends"
    },
    {
      "package": "graphics",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Depends"
    },
    {
      "package": "utils",
      "role": "Depends"
    },
    {
      "package": "surveillance",
      "version": ">= 1.14.0",
      "role": "Depends"
    },
    {
      "package": "sp",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "role": "Suggests"
    },
    {
      "package": "lattice",
      "role": "Suggests"
    },
    {
      "package": "gridExtra",
      "role": "Suggests"
    }
  ],
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  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_userbio": {
    "uuid": 4366501,
    "type": "user",
    "name": "Sebastian Meyer",
    "description": "statistician and postdoc @ FAU Erlangen, R-core contributor"
  },
  "_downloads": {
    "count": 299,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/hhh4contacts"
  },
  "_mentions": 1,
  "_devurl": "https://codeberg.org/ee-hub/hhh4contacts",
  "_searchresults": 23,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/hhh4contacts.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://codeberg.org/ee-hub/hhh4contacts",
  "_realowner": "bastistician",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.13.0",
      "date": "2017-06-30"
    },
    {
      "version": "0.13.1",
      "date": "2020-03-20"
    },
    {
      "version": "0.13.2",
      "date": "2023-10-23"
    },
    {
      "version": "0.13.3",
      "date": "2023-11-06"
    },
    {
      "version": "0.13.4",
      "date": "2024-10-07"
    }
  ],
  "_exports": [
    "adaptP",
    "addGroups2WFUN",
    "aggregateC",
    "aggregateCountsArray",
    "C2pop",
    "contactmatrix",
    "dssAggregate",
    "expandC",
    "fitC",
    "make_powerC",
    "noroBE",
    "plotC",
    "plotHHH4_fitted_groups",
    "plotHHH4_maps_groups",
    "plotHHH4_season_groups",
    "stationary",
    "stratum",
    "stsplothook_highlight"
  ],
  "_datasets": [
    {
      "name": "contactmatrix_mossong",
      "title": "POLYMOD Contact Matrices for Germany",
      "object": "contactmatrix_mossong",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "00-04",
        "05-09",
        "10-14",
        "15-19",
        "20-24",
        "25-29",
        "30-34",
        "35-39",
        "40-44",
        "45-49",
        "50-54",
        "55-59",
        "60-64",
        "65-69",
        "70+"
      ],
      "rows": 15,
      "table": true,
      "tojson": true
    },
    {
      "name": "contactmatrix_mossong_physical",
      "title": "POLYMOD Contact Matrices for Germany",
      "object": "contactmatrix_mossong",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "00-04",
        "05-09",
        "10-14",
        "15-19",
        "20-24",
        "25-29",
        "30-34",
        "35-39",
        "40-44",
        "45-49",
        "50-54",
        "55-59",
        "60-64",
        "65-69",
        "70+"
      ],
      "rows": 15,
      "table": true,
      "tojson": true
    },
    {
      "name": "contactmatrix_POLYMOD",
      "title": "POLYMOD Contact Matrices for Germany",
      "object": "contactmatrix_POLYMOD",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "00-04",
        "05-09",
        "10-14",
        "15-19",
        "20-24",
        "25-29",
        "30-34",
        "35-39",
        "40-44",
        "45-49",
        "50-54",
        "55-59",
        "60-64",
        "65-69",
        "70+"
      ],
      "rows": 15,
      "table": true,
      "tojson": true
    },
    {
      "name": "contactmatrix_POLYMOD_physical",
      "title": "POLYMOD Contact Matrices for Germany",
      "object": "contactmatrix_POLYMOD",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "00-04",
        "05-09",
        "10-14",
        "15-19",
        "20-24",
        "25-29",
        "30-34",
        "35-39",
        "40-44",
        "45-49",
        "50-54",
        "55-59",
        "60-64",
        "65-69",
        "70+"
      ],
      "rows": 15,
      "table": true,
      "tojson": true
    },
    {
      "name": "contactmatrix_wallinga",
      "title": "POLYMOD Contact Matrices for Germany",
      "object": "contactmatrix_wallinga",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "00-04",
        "05-09",
        "10-14",
        "15-19",
        "20-24",
        "25-29",
        "30-34",
        "35-39",
        "40-44",
        "45-49",
        "50-54",
        "55-59",
        "60-64",
        "65-69",
        "70+"
      ],
      "rows": 15,
      "table": true,
      "tojson": true
    },
    {
      "name": "contactmatrix_wallinga_physical",
      "title": "POLYMOD Contact Matrices for Germany",
      "object": "contactmatrix_wallinga",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "00-04",
        "05-09",
        "10-14",
        "15-19",
        "20-24",
        "25-29",
        "30-34",
        "35-39",
        "40-44",
        "45-49",
        "50-54",
        "55-59",
        "60-64",
        "65-69",
        "70+"
      ],
      "rows": 15,
      "table": true,
      "tojson": true
    },
    {
      "name": "counts",
      "title": "Create '\"sts\"' Objects from the Berlin Norovirus Data",
      "object": "berlin",
      "class": [
        "array"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "map",
      "title": "Create '\"sts\"' Objects from the Berlin Norovirus Data",
      "object": "berlin",
      "class": [
        "SpatialPolygonsDataFrame"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "pop2011",
      "title": "Berlin and German Population by Age Group, 2011",
      "object": "berlin",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "00-04",
        "05-09",
        "10-14",
        "15-19",
        "20-24",
        "25-29",
        "30-34",
        "35-39",
        "40-44",
        "45-49",
        "50-54",
        "55-59",
        "60-64",
        "65-69",
        "70+"
      ],
      "rows": 12,
      "table": true,
      "tojson": true
    },
    {
      "name": "popDE",
      "title": "Berlin and German Population by Age Group, 2011",
      "object": "popDE",
      "class": [
        "integer"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "adaptP",
      "title": "Adapt a Transition Matrix to a Specific Stationary Distribution",
      "topics": [
        "adaptP"
      ]
    },
    {
      "page": "addGroups2WFUN",
      "title": "Group-Dependent Parametric Weights",
      "topics": [
        "addGroups2WFUN"
      ]
    },
    {
      "page": "aggregateC",
      "title": "Aggregate a Contact Matrix",
      "topics": [
        "aggregateC"
      ]
    },
    {
      "page": "aggregateCountsArray",
      "title": "Aggregate an Array of Counts wrt One Dimension (Stratum)",
      "topics": [
        "aggregateCountsArray"
      ]
    },
    {
      "page": "C2pop",
      "title": "Adapt a Contact Matrix to Population Fractions",
      "topics": [
        "C2pop"
      ]
    },
    {
      "page": "contactmatrix",
      "title": "POLYMOD Contact Matrices for Germany",
      "topics": [
        "contactmatrix",
        "contactmatrix_mossong",
        "contactmatrix_mossong_physical",
        "contactmatrix_POLYMOD",
        "contactmatrix_POLYMOD_physical",
        "contactmatrix_wallinga",
        "contactmatrix_wallinga_physical"
      ]
    },
    {
      "page": "dssAggregate",
      "title": "Compute the DSS on Aggregated Predictions and Observations",
      "topics": [
        "dssAggregate"
      ]
    },
    {
      "page": "expandC",
      "title": "Expand the Contact Matrix over Regions",
      "topics": [
        "expandC"
      ]
    },
    {
      "page": "fitC",
      "title": "Estimate the Power of the Contact Matrix in a '\"hhh4\"' Model",
      "topics": [
        "fitC"
      ]
    },
    {
      "page": "noroBE",
      "title": "Create '\"sts\"' Objects from the Berlin Norovirus Data",
      "topics": [
        "counts",
        "map",
        "noroBE"
      ]
    },
    {
      "page": "plotC",
      "title": "Generate an Image of a Contact Matrix",
      "topics": [
        "plotC"
      ]
    },
    {
      "page": "plotHHH4_fitted_groups",
      "title": "Plot Mean Components of a 'hhh4' Fit by Group",
      "topics": [
        "plotHHH4_fitted_groups"
      ]
    },
    {
      "page": "plotHHH4_maps_groups",
      "title": "Plot Mean Components of a 'hhh4' Fit by District Averaged Over Time",
      "topics": [
        "plotHHH4_maps_groups"
      ]
    },
    {
      "page": "plotHHH4_season_groups",
      "title": "Plot Seasonality of a 'hhh4' Fit by Group",
      "topics": [
        "plotHHH4_season_groups"
      ]
    },
    {
      "page": "pop2011",
      "title": "Berlin and German Population by Age Group, 2011",
      "topics": [
        "pop2011",
        "popDE"
      ]
    },
    {
      "page": "powerC",
      "title": "Exponentiate a Matrix via Eigendecomposition",
      "topics": [
        "make_powerC",
        "powerC"
      ]
    },
    {
      "page": "stationary",
      "title": "Stationary Distribution of a Transition Matrix",
      "topics": [
        "stationary"
      ]
    },
    {
      "page": "stratum",
      "title": "Extract Strata",
      "topics": [
        "stratum",
        "stratum,sts-method"
      ]
    },
    {
      "page": "stsplothook",
      "title": "Hook functions for 'stsplot_time1'",
      "topics": [
        "stsplothook",
        "stsplothook_highlight"
      ]
    }
  ],
  "_readme": "https://codeberg.org/ee-hub/hhh4contacts/raw/HEAD/README.md",
  "_rundeps": [
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    "lattice",
    "MASS",
    "Matrix",
    "nlme",
    "polyclip",
    "polyCub",
    "sp",
    "spatstat.data",
    "spatstat.geom",
    "spatstat.univar",
    "spatstat.utils",
    "surveillance",
    "xtable"
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  "_indexed": true,
  "_nocasepkg": "hhh4contacts",
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